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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00119572001 | ||||||||
Common Name | GSBRNA2T00119572001, LOC106423964 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 407aa MW: 42809.9 Da PI: 9.3388 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.3 | 3.5e-38 | 92 | 151 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nny+l+qPr+fCkaCrryWt+GGalr vPvGgg+r+nk+++ GSBRNA2T00119572001 92 ETALKCPRCDSTNTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTK 151 6789*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-38 | 75 | 149 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.6E-32 | 94 | 149 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.553 | 95 | 149 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 97 | 133 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MVFSSFPTYP DSSNWQQQHQ PITTTVGFTG NNNISQQFLP HHPLPPQPQQ TPPPLQHNGN 60 GGGGGGPGGP GGLIRPGSMA ERARLANIPL PETALKCPRC DSTNTKFCYF NNYNLTQPRH 120 FCKACRRYWT RGGALRSVPV GGGCRRNKRT KNSGGGGASS SSGNSKSQDS TTSNDQYHHR 180 AMANNQMGPP TSTSLSSLLS SYNAGLIPGH DHNNNNNNIL GLGSSLSPLK LMHPSDFTDN 240 FTLQYGAVSA PSYHTGGGSS GGSGGGGASA ILTGLDQWRF PATHHQLPLL GGLDNSSSSG 300 LYPFDHQNPG YGLVTGSGQY RPKNIFHNLV SSSSSASSAM VPATASQLAS VKMEDSNNQL 360 NMSRQLFGNE QELWNIHGSA ASTAAASTNS WSDVSNNFSS SSTSNI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14538 | 6e-86 | seed |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00483 | DAP | Transfer from AT5G02460 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189646 | 0.0 | AC189646.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS009G14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013720160.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.1-like | ||||
Swissprot | Q9LZ56 | 1e-168 | DOF51_ARATH; Dof zinc finger protein DOF5.1 | ||||
TrEMBL | A0A078ESE0 | 0.0 | A0A078ESE0_BRANA; BnaAnng00370D protein | ||||
STRING | Bra028872.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11519 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 1e-146 | Dof family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106423964 |
Publications ? help Back to Top | |||
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